Karolinska Institutet Department of Biosciences and Nutrition Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 Study time Vecka 15 8.00 9.00 10.00 11.00 Måndag 6 april Tisdag 7 april Onsdag 8 april 12.00 13.00 14.00 15.00 16.00 Easter Monday MBK-­‐Re-­‐test, 15.00-­‐ 16.15, Meeting room Individual studies MBK-­‐Re-­‐examination, 9.00-­‐15.00, MF lecture room Individual studies Torsdag 9 april Individual studies Fredag 10 april Individual studies 1 Karolinska Institutet Department of Biosciences and Nutrition Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 1. Medical genetics, 13-17 april Vecka 16 8.00 9.00 Måndag 13 april 10.00 11.00 12.00 Introduction och genomgång av övningsuppgifter Kromosomer och Kromosomavvikelser JL Rehabsalen PG Rehabsalen 13.00 15.00 16.00 Monogena och multifaktoriella sjukdomar Lunch KLR och HM CMB, von Eulers v 3 Rehabsalen Monogena och multifaktoriella sjukdomar forts Tisdag 14 april 14.00 Genetisk vägledning och Fosterdiagnostik Lunch KLR och HM Rehabsalen Individual studies EB Rehabsalen Syndromutredningar Onsdag 15 april Lunch JL Egen tid; Instuderingsfrågor Individual studies Welandersalen Cancergenetik Torsdag 16 april Lunch ET Förberedelse övningsuppgifter Rehabsalen Övningsuppgifter i Klinisk Genetik * Fredag 17 april JL, KLR, HM, AL Astra (T3), Glaxo (T3), Pharmacia (T3), Solander (T3) Obligatoriskt moment Individual studies Lärare: AL Agne Lieden KLR Kristina Lagerstedt Robinson PG Peter Gustavsson ET Emma Tham HM Helena Malmgren EB Erik Björck * = mandatory Rehabsalen, Karolinska Universitetssjukhuset Solna, Norrbacka, S4:01 Welandersalen, Karolinska Universitetssjukhuset Solna, B4:00 Adresser till salar övriga veckor finns även på sista sidan i schemat 2 Karolinska Institutet Department of Biosciences and Nutrition Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 2. Molecular biological techniques, April 20 - May 8 Vecka 17 8.00 Måndag 20 april 9.00 10.00 Introduction Introductory Microbiology: Understanding Our Microbiome PA 6L Tisdag 21 apr Onsdag 22 apr 11.00 PA 6L TJ 6L 15.00 Individual studies CZ 6L Global gene expression Immunohistochemistry Introduction to the lab* Individual studies FF 6L Methods to analyse DNA Lunch PSV 6L Lab:* cDNA synthesis and PCR Group 5-8 16.00 Enzymes used in DNA Transfection and reporter genes manipulation Lunch Protein:protein interactions CZ 6L Course lab 2 Fredag 24 apr Lunch 14.00 PA 6L Real time PCR Course lab 2 Torsdag 23 apr 13.00 VA 6L Cloning techniques and PCR Lab:* RNA extraction Group 1-4 12.00 KY 6L DNA-binding / promoter Lab:* recruitment, chromatin RNA extraction Group 5-8 PD 6L Course lab 2 Lab:* cDNA synthesis and PCR Group 1-4 IN Individual studies Individual studies Course lab 2 Lab:* Isolation of DNA fragments and restriction enzyme digestion and DNA cloning Group 5-8 Fluorescence microscopy Course lab 2 SLG 6L Lab:* Isolation of DNA fragments and restriction enzyme digestion and DNA cloning Group 1-4 Course lab 2 Alfred Nobels Allé 8, Lecture hall 6L; Hospital, Hus F, Blickagången 9, Kurslab 2 Lärare: VA Velmurugesan Arulampalam TJ Tomas Jakobsson AV Alessandra Villa PS Peter Swoboda PD Pauliina Damdimopoulou KY Konstantin Yakimchuk IN Ivan Nalvarte CD Carsten Daub SLG Sylvie Le Guyader PSV Peter Svensson MÖ Marie Österlund FF CZ Chunyan Zhao PA Per Antonson Fredrik Fagerström-Billai * = mandatory Adresser till alla salar finns på sista sidan i schemat 3 Karolinska Institutet Department of Biosciences and Nutrition Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 Molecular biological techniques, continuing Vecka 18 8.00 9.00 10.00 11.00 Lab:* Transformation Group 1-4 Måndag 27 apr Protein analysis (1D/2D Western, Massspec, proteomics), I Lab:* Transformation Group 1-4 Lunch IN 6F Course lab 2 Onsdag 29 apr 13.00 14.00 15.00 Transgene technology Lab:* Transformation Group 5-8 PA 6L Course lab 2 Course lab 2 Tisdag 28 apr 12.00 Knockout technology Proteomics and systems biology PA 6L CD 6L Individual studies Protein analysis (1D/2D Western, Mass-spec, Lab:* proteomics) II Transformation Group 5-8 IN 6F Course lab 2 Lunch MÖ 6L Individual studies Fredag 1 maj Första Maj Individual studies Lab: * Lab: * Group 5-8 Group 1-4 Start o/n cultures Start o/n cultures Pharm drug dev Torsdag 30 apr 16.00 Course lab 2 Individual studies Course lab 2 Alfred Nobels Allé 8, Lecture hall 6L and 6F; Hospita, Hus F, Blickagången 9, Kurslab 2 Lärare: VA Velmurugesan Arulampalam TJ Tomas Jakobsson AV Alessandra Villa PS Peter Swoboda PD Pauliina Damdimopoulou KY Konstantin Yakimchuk IN Ivan Nalvarte CD Carsten Daub SLG Sylvie Le Guyader PSV Peter Svensson MÖ Marie Österlund FF CZ Chunyan Zhao PA Per Antonson Fredrik Fagerström-Billai * = mandatory Adresser till alla salar finns på sista sidan i schemat 4 Karolinska Institutet Department of Biosciences and Nutrition Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 Molecular biological techniques, continuing Vecka 19 8.00 9.00 10.00 11.00 Lab:* Restriction enzym digest and gel analysis Group 1-4 Måndag 4 maj 12.00 13.00 Time for questions 6L Course lab 2 16.00 Individual studies Course lab 2 Individual studies/write labreport Onsdag 6 maj Individual studies/write labreport 09.00 - 12.00 Intermediate exam 2 15.00 Lab:* Restriction enzym digest and gel analysis Group 5-8 Tisdag 5 maj Torsdag 7 maj 14.00 Lunch Individual studies/write labreport Lunch Individual studies/write labreport Exam hall 5Y C. Elegans Fredag 8 maj PSW 6L Alfred Nobels Allé 8, Lecture hall 6L, 6F and Exam hall 5Y, Hospita, Hus F, Blickagången 9, Course lab 2 Lärare: VA Velmurugesan Arulampalam TJ Tomas Jakobsson AV Alessandra Villa PS Peter Swoboda PD Pauliina Damdimopoulou KY Konstantin Yakimchuk IN Ivan Nalvarte CD Carsten Daub SLG Sylvie Le Guyader PSV Peter Svensson MÖ Marie Österlund FF CZ Chunyan Zhao PA Per Antonson Fredrik Fagerström-Billai * = mandatory Adresser till alla salar finns på sista sidan i schemat 5 Karolinska Institutet Department of Biosciences and Nutrition Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 3. Bioinformatics, May 11 - 13 Vecka 20 8.00 9.00 10.00 11.00 Introduction to Bioinformatics Måndag 11 maj 12.00 Genome organization and evolution PSV 6L 13.00 Lunch CD 6L Lunch PSV 6L CD 6L Lunch PSV 6F Lab 1 * Group 1-4 16.00 Individual studies Lab 1 * Group 5-8 Individual studies PSV Computer room 6G Matilda Alignments and phylogenetic trees Structural bioinformatics Onsdag 13 maj 15.00 PSV Computer room 6G Matilda Scientific publications and archives Archives and information retrieval Tisdag 12 maj 14.00 PSV 6F Torsdag 14 maj Kristi Himmelfärdsdag Fredag 15 maj Individual studies Lab 2 * Group 1-4 Lab 2* Group 5-8 PSV Computer room 6G Matilda PSV Computer room 6G Matilda Alfred Nobels Allé 8, Lecture hall 6L, 6F and Computer room Matilda, 6G Lärare: VA Velmurugesan Arulampalam TJ Tomas Jakobsson AV Alessandra Villa PS Peter Swoboda PD Pauliina Damdimopoulou KY Konstantin Yakimchuk IN Ivan Nalvarte CD Carsten Daub SLG Sylvie Le Guyader PSV Peter Svensson MÖ Marie Österlund FF CZ Chunyan Zhao PA Per Antonson Fredrik Fagerström-Billai * = mandatory Adresser till alla salar finns på sista sidan i schemat 6 Karolinska Institutet Department of Biosciences and Nutrition Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 3. Structure biology, May 18 - 22 Vecka 21 8.00 9.00 10.00 11.00 12.00 13.00 Protein structure and stability Måndag 18 maj Lunch AV 6L Lunch AV 6L Lunch AV 6L Lunch AV 6F Structure biology Computer lab * Group 5-8 Individual studies Structure biology Computer lab * Group 1-4 Individual studies Structure biology Computer lab * Group 5-8 Individual studies Computer room 6G Matilda Structure prediction and molecular modelling Fredag 22 maj Individual studies Computer room 6G Matilda Other techniques to determine protein structure Torsdag 21 maj 16.00 Computer room 6G Matilda Methods to determine three-dimensional structure II Onsdag 20 maj Structure biology Computer lab * Group 1-4 15.00 Computer room 6G Matilda Methods to determine three-dimensional structure I Tisdag 19 maj 14.00 Lunch AV 6L Structure biology Computer lab * Correction, Group 1-8 Individual studies Computer room 6G Matilda Alfred Nobels Allé 8, Lecture hall 6L, 6F and Computer room Matilda 6G Lärare: VA Velmurugesan Arulampalam TJ Tomas Jakobsson AV Alessandra Villa PS Peter Swoboda PD Pauliina Damdimopoulou KY Konstantin Yakimchuk IN Ivan Nalvarte CD Carsten Daub SLG Sylvie Le Guyader PSV Peter Svensson MÖ Marie Österlund FF CZ Chunyan Zhao PA Per Antonson Fredrik Fagerström-Billai * = mandatory Adresser till alla salar finns på sista sidan i schemat 7 Karolinska Institutet Department of Biosciences and Nutrition Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 4. Strukturbiologi, 19 maj - 23 maj Vecka 22 8.00 9.00 10.00 11.00 12.00 13.00 14.00 09.00-12.00 Retake Intermediate exam 2 Måndag 25 maj Tisdag 26 maj 15.00 16.00 Preparation of presentations Preparation of presentations Onsdag 27 maj Preparation of presentations Integrating project * Presentations Torsdag 28 maj Lunch 6L Integrating project * Presentations Individual studies 6L Fredag 29 maj Individual studies Alfred Nobels Allé 8, Lecture hall 6L Lärare: VA Velmurugesan Arulampalam TJ Tomas Jakobsson AV Alessandra Villa PS Peter Swoboda PD Pauliina Damdimopoulou KY Konstantin Yakimchuk IN Ivan Nalvarte CD Carsten Daub SLG Sylvie Le Guyader PSV Peter Svensson MÖ Marie Österlund FF CZ Chunyan Zhao PA Per Antonson Fredrik Fagerström-Billai * = mandatory Adresser till alla salar finns på sista sidan i schemat 8 Karolinska Institutet Department of Biosciences and Nutrition Vecka 23 8.00 9.00 Måndag 1 juni Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics 10.00 11.00 Time for questions 12.00 Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 13.00 14.00 15.00 16.00 Course council meeting Individual studies Individual studies 6F GREEN Meeting Room Tisdag 2 juni Individual studies Onsdag 3 juni Individual studies 09:00 - 15:00 Exam Torsdag 4 juni Exam hall 5Y Fredag 5 juni Alfred Nobels Allé 8, Lecture hall 6L and Exam hall 5Y; Novum, Blickagången 6, floor 6 (elevator F), Meeting room GREEN, Lärare: VA Velmurugesan Arulampalam TJ Tomas Jakobsson AV Alessandra Villa PS Peter Swoboda PD Pauliina Damdimopoulou KY Konstantin Yakimchuk IN Ivan Nalvarte CD Carsten Daub SLG Sylvie Le Guyader PSV Peter Svensson MÖ Marie Österlund FF CZ Chunyan Zhao PA Per Antonson Fredrik Fagerström-Billai * = mandatory Adresser till alla salar finns på sista sidan i schemat 9 Karolinska Institutet Department of Biosciences and Nutrition Cell Biology and Genetics, Spring 2015 Part 2: Molecular biology with genetics Adresser 'll undervisningslokaler Literature Bioinforma'cs Kartor över Karolinska ,Solna och Huddinge finns på kurswebben under rubriken "Schema" Arthur Lesk, IntroducKon to BioinformaKcs, 3rd ediKon Petrénsalen Nobels väg 12B KI Campus, Solna Rehabsalen Norrbacka, Karolinska Universitetssjukhuset, Solna S4:01 Welandersalen, B4:00 Karolinska Universitetssjukhuset, Solna B4:00, Ingång B2 Sal 6L+6F Alfred Nobels Allé 8, plan 6 KI Campus, Huddinge Kurslab 2 Hus F2, plan 8 Karolinska Universitetssjukhuset, Huddinge Datasal 6G Alfred Nobels Allé 8, plan 6 KI Campus, Huddinge Skrivsal 5Y Alfred Nobels Allé 8, plan 5 KI Campus, Huddinge Schedule weeks 16-­‐23, preliminary, updated 2015-­‐01-­‐27 1: IntroducHon 2: Genome organizaHon and evoluHon 3: ScienHfic publicaHons and archives 4: Archives and informaHon retrieval 5: Alignments and phylogeneHc trees 6: Structural bioinformaHcs 7: Proteomics and systems biology 10